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Conference Proceedings
1. Carmi, G. G.##, Tagore, S. S.##, Sivan, A.##, Gorohovski, A.##, Li, K., Nevo, E., Raviv Shay, D., Frenkel-Morgenstern, M. PASTORAL: The Database of Protein Protein Interactions of the Stress Response Genes in Subterranean and Fossorial Animals. 7th Translational Research Day , February 26, 2018, Bar Ilan University, Safed, Israel (Poster). Equal Contribution.
2. Tagore, S. S., Frenkel Morgenstern, M. (2018) Site directed percolation of fusion protein protein interaction networks reveal multi interface hubs as potential drug targets . International School and Conference on Network Science (NetSci X)X), Hangzhou, China, January 6 8, 2018 (Oral).
3. Frenkel Morgenstern, M., Gorohovski, A., Tagore, S. S., Sekar, V., Vazquez, M., Valencia, A. (2017) Chimeric Protein Protein Interaction Networks R eveal Alterations in Cancer Specific Phenotypes. 15th RECOMB Comparative Genomics Satellite Workshop , Barcelona, Spain, October 4 6, 2017 (Poster).
4. Tagore, S., Frenkel-Morgenstern, M. (2017) A community-based Naïve Bayes method for classifying oncogenes and tumor suppressors using fusion protein-protein interaction networks. 42nd FEBS Congress, Jerusalem, Israel, September 10 – 14, 2017 (Poster).
5. Tagore, S., Frenkel-Morgenstern, M. (2017) Percolation-like phase transitions in protein-protein interactions networks of fusions reveal a discrepancy in cancer phenotypes. ISMB 2017 - Intelligent Systems for Molecular Biology (ISMB), Student Council Symposium, Prague, Czech Republic, July 21, 2017 (Poster).
6. Tagore, S., Frenkel-Morgenstern, M. (2017) The communities of party hubs in fusion protein-protein interaction networks increases their robustness against site-directed knockouts. ISMB 2017 - Intelligent Systems for Molecular Biology (ISMB), Net-Biol COSI, Prague, Czech Republic, July 21 – 25, 2017 (Poster, Talk).
7. Tagore, S., Frenkel-Morgenstern, M. (2017) Classifying oncogenes and tumor suppressors in fusion protein-protein interaction networks using a community-based Naïve Bayes approach. ISMB 2017 - Intelligent Systems for Molecular Biology (ISMB), Sys-Mod COSI, Prague, Czech Republic, July 21 – 25, 2017 (Poster).
8. Tagore, S., Gorohovski, A., Jensen, L.J., Frenkel-Morgenstern, M. (2017) A Text Mining Approach Characterizes Fusion Proteins and Their Interactions From PubMed Publications. ISMB 2017 - Intelligent Systems for Molecular Biology (ISMB), Bio-Ontology COSI, Prague, Czech Republic, July 21 – 25, 2017 (Talk, Flash Update).
9. Tagore, S., Frenkel-Morgenstern, M. (2017) The percolation model of fusion protein-protein interaction networks reveals multi-interface hubs as potential drug targets. Great Lakes Bioinformatics Conference (GLBIO-2017), May 15- 17, 2017, Univ. of Illinois at Chicago, U.S.A. (Oral).
10. Frenkel-Morgenstern, M., Tagore, S., Valencia, A. (2017) The Percolation Analysis of the Chimeric Protein-Protein Interactions in the PanCancer Datasets. Pancancer Teleconference, March 22, 2017 (Talk).
11. Tagore, S., Frenkel-Morgenstern, M. (2017) The percolation model of the chimeric protein-protein interaction networks reveals central nodes as potential drug targets, 6th Translational Research Day, March 01, 2017, Bar-Ilan University, Safed, Israel (Oral).
12. Tagore, S., Frenkel-Morgenstern, M. (2017) Protein-protein Interaction Networks of Cancer Fusions Display Small World Behavior and Strong Resilience against Perturbing Lower-Degree Hubs. 8Th ILANIT / FISEB Conference, Eilat, Israel, February 20-23, 2017 (E-Poster).
13. Tagore, S., Gorohovski, A., Jensen, L.J., Frenkel-Morgenstern, M. (2016) ProtFus: a python repository for tagging fusion proteins and their interactions in text, ISMB 2016 - Intelligent Systems for Molecular Biology (ISMB) 2016 Orlando, Florida, U.S.A., July 8 – 12, 2016 (Abstract+Poster).
14. Tagore, S., Gorohovski, A., Jensen, L.J., Frenkel-Morgenstern, M. (2016) ProtFus: a tool for identifying fusion proteins and their interactions from text, IBS 2016 - Israeli Bioinformatics Symposium, University of Haifa, May 18, 2016, Israel (Abstract+Poster).
15. Tagore, S., Frenkel-Morgenstern, M. (2016) ProtFus: a python repository for tagging fusion protein instances in PubMed, 5th Translational Research Day, February 15, 2016, Bar-Ilan University, Safed, Israel (Poster).
Conference Publications, Posters and Invited Talks
• Milana Frenkel-Morgenstern. (2017) Chimeric Protein-Protein Interaction Networks and their Alterations are Cancer Phenotype Specific. The 19th Israeli Bioinformatics Symposium. May 15th, 2017. Weizmann Institute of Science. (Invited Talk)
• Milana Frenkel-Morgenstern (2017) Functional Selection of Chimeric Proteins in Cancer Through Alterations in the Chimeric Protein-Protein Interaction Networks. February 2017. Migal Conference in NGS (Invited Talk).
• Milana Frenkel-Morgenstern (2015). Non-optimal codon usage produce cell-cycle regulation in human cells. CECAM conference. October 13-16, 2015, Tel-Aviv.(Invited Talk)
• Tagore, S., Frenkel-Morgenstern, M. (2017) The communities of party hubs in fusion protein-protein interaction networks increases their robustness against site-directed knockouts. ISMB 2017 - Intelligent Systems for Molecular Biology (ISMB), Net-Biol COSI, Prague, Czech Republic, July 21 – 25, 2017 (Accepted) (Poster, Talk).
• Tagore, S., Frenkel-Morgenstern, M. (2017) Classifying oncogenes and tumor suppressors in fusion protein-protein interaction networks using a community-based Naïve Bayes approach. ISMB 2017 - Intelligent Systems for Molecular Biology (ISMB), Sys-Mod COSI, Prague, Czech Republic, July 21 – 25, 2017 (Accepted) (Poster).
• Tagore, S., Gorohovski, A., Jensen, L.J., Frenkel-Morgenstern, M. (2017) A Text Mining Approach Characterizes Fusion Proteins and Their Interactions From PubMed Publications. ISMB 2017 - Intelligent Systems for Molecular Biology (ISMB), Bio-Ontology COSI, Prague, Czech Republic, July 21 – 25, 2017 (Accepted) (Talk, Flash Update).
• Tagore, S., Frenkel-Morgenstern, M. (2017) The percolation model of fusion protein-protein interaction networks reveals multi-interface hubs as potential drug targets. Great Lakes Bioinformatics Conference (GLBIO-2017), May 15- 17, 2017, Univ. of Illinois at Chicago, U.S.A. (Oral).
• Tagore, S., Frenkel-Morgenstern, M. (2017) Chimeric Protein-Protein Interaction Networks Reveal Alterations in Cancer-Specific Phenotypes. sbv Improver Epigenomics Challenge, May 04, 2017, Tel-Aviv, Israel (Poster).
• Frenkel-Morgenstern, M., Tagore, S., Valencia, A. (2017) The Percolation Analysis of the Chimeric Protein-Protein Interactions in the PanCancer Datasets. Pancancer Teleconference, March 22, 2017 (Talk).
• Tagore, S., Frenkel-Morgenstern, M. (2017) The percolation model of the chimeric protein-protein interaction networks reveals central nodes as potential drug targets, 6th Translational Research Day, March 01, 2017, Bar-Ilan University, Safed, Israel (Oral).
• Tagore, S., Frenkel-Morgenstern, M. (2017) Protein-protein Interaction Networks of Cancer Fusions Display Small World Behavior and Strong Resilience against Perturbing Lower-Degree Hubs. 8Th ILANIT / FISEB Conference, Eilat, Israel, February 20-23, 2017 (E-Poster).
• Tagore, S., Gorohovski, A., Jensen, L.J., Frenkel-Morgenstern, M. (2016) ProtFus: a python repository for tagging fusion proteins and their interactions in text, ISMB 2016 - Intelligent Systems for Molecular Biology (ISMB) 2016 Orlando, Florida, U.S.A., July 8 – 12 July, 2016 (Poster).
• Tagore, S., Gorohovski, A., Jensen, L.J., Frenkel-Morgenstern, M. (2016) ProtFus: a tool for identifying fusion proteins and their interactions from text, IBS 2016 - Israeli Bioinformatics Symposium, University of Haifa, May 18, 2016, Israel (Poster).
• Tagore, S., Frenkel-Morgenstern, M. (2016) ProtFus: a python repository for tagging fusion protein instances in PubMed, 5th Translational Research Day, February 15, 2016, Bar-Ilan University, Safed, Israel (Poster).